Quantify in vivo protein-DNA interactions using the combination of chromatin immunoprecipitation with Illumina Sequencing technology (ChIP-Seq) on a genome-wide scale. Sequencing millions of ChIP-enriched DNA fragments using the Genome Analyzer enables cost-effective and precise analysis of the binding sites of transcription factors, replication and transcriptional machinery, structural proteins such as histones, as well as of the impact of protein modifications on genome occupancy.
Protein-nucleic acid interactions highlights
Download a demo ChIP-Seq data set that was used in "Experiment 2" from Johnson et al., Genome-Wide Mapping of in Vivo Protein-DNA Interactions, published in the journal Science, June 8, 2007.
This data is provided courtesy of the Barbara Wold Lab at CalTech and can be loaded into the UCSC Genome Browser as a custom track.